21 May Note About your calculation off genotype cost having sex chromosomes: towards the Y, lady was forgotten totally
All the per-SNP summary statistics described below are conducted after removing individuals with high missing genotype rates, as defined by the --brain option. The default value of which is 0 however, i.e. do not exclude any individuals.
Toward males, heterozygous X and heterozygous Y genotypes are addressed as the forgotten. Obtaining best designation out of intercourse are for this reason important to obtain real genotype price prices, or prevent improperly deleting samples, etcetera.